SBI – Department of Systems Biology and Bioinformatics
Faculty of Computer Science and Electrical Engineering
University of Rostock
Ulmenstrasse 69 | 18057 Rostock
Germany
+49 381 498-7571
olaf.wolkenhauer@uni-rostock.de
Thesis title: "Compartmental Modelling of the Wnt pathway"
Research interest
Nucleo-cytoplasmic antagonist shuttling
"I am interested in Wnt signalling and its role in differentiation, where I am focussing on the role of nucleo-cytoplasmic antagonist shuttling."
The Wnt signalling pathway plays a significant role in the differentiation of neuronal stem cells. The protein β-catenin is the main protagonist and transcriptional co-factor of the pathway. However, not only β-catenin, also its antagonists have been proven to shuttle between cytoplasm and nucleus, while the functional relevance of this is still controversial.
How is the output of the pathway influenced by antagonist shuttling? Can Wnt signalling benefit from antagonist shuttling?
We formulated different hypotheses in order to examine the relevance of nucleo-cytoplasmic antagonist shuttling using mathematical modelling. We have investigated different shuttling mechanism (diffusive and facilitated transport) and considered retention of β-catenin by the antagonists as a possible function.
We found that Wnt signalling can benefit from nucleo-cytoplasmic shuttling of β-catenin antagonists. The analysis of the models shows that the breakdown of β-catenin cytoplasmic retention induced by APC shuttling can maximize the output of the pathway. Our study indicates that one protein may have two opposing functions within the same pathway depending on the cellular context. Furthermore, we showed that saturated protein translocation can under certain conditions be modelled by pure diffusion. A difference in the shuttling rate constants of sufficient orders of magnitude leads to an accumulation in either compartment, which corresponds to saturation in translocation.
Academic background
2009 |
Internship at the Sethna Group, |
2007 - 2014 |
PhD-Student at the SBI Team at the University of Rostock, |
2007 |
Dipl. Phys. (comparable to a Masters degree in physics) |
2002 - 2003 |
Courses in the masters program of the Department of Physics |
1999 - 2007 |
Student of Physics |
Selected publications
Analysing the impact of nucleo-cytoplasmic shuttling of beta-catenin and its antagonists APC, Axin and GSK3 on Wnt/beta-catenin signalling
Schmitz Y, Rateitschak K, Wolkenhauer O (2013)
Cellular Signalling, 2210:2221
Spatio-temporal distribution changes and nucleo-cytoplasmic shuttling rates regulate differentiation in human neural progenitor cells
Bader BM, Schmitz Y, Kuznetsov SA, Weiss DG (2013)
submitted for publication
Multi-compartmental modeling of SORLA's influence on amyloidogenic processing in Alzheimer's disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O (2012)
BMC Systems Biology 6:74
Quantitative modeling of amyloidogenic processing and its influence by SORLA in Alzheimer's disease
Schmidt V, Baum K, Lao A, Rateitschak K, Schmitz Y, Teichmann A, Wiesner B, Petersen CM, Nykjaer A, Wolf J, Wolkenhauer O, Willnow T (2012)
EMBO Journal 31: 187-200
Nucleo-cytoplasmic shuttling of APC can maximize beta-catenin/TCF concentration
Schmitz Y, Wolkenhauer O, Rateitschak K (2011)
Journal of Theoretical Biology 279: 132-142
Pattern Formation of Competing Microorganisms in Sediments
Schmitz Y, Baurmann M, Engelen B, Feudel U (2007)
Mathematical Modelling of Natural Phenomena 4: 74-104
access
Regulated Trafficking of APP by SORLA in Alzheimers Disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O
Systems Medicine International Conference (SYSMED), Dublin, Ireland, 9 September - 13 September 2012
Venue: Dublin, Ireland
Multi-compartmental modeling of APP processing influenced by SORLA in Alzheimers disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O
13th International Conference on Systems Biology (ICSB), Toronto, Canada, 19 August - 23 August 2012
Venue: Toronto, Canada
Mathematical Modeling of APP Processing influenced by SORLA in Alzheimers Disease
Lao A, Schmitz Y, Schmidt V, Rateitschak K, Wolf J, Willnow T, Wolkenhauer O
12th International Conference on Systems Biology (ICSB), Heidelberg/Mannheim, Germany, 28 August - 1 September 2011
Venue: Heidelberg/Mannheim, Germany
Mathematical modelling of the Wnt pathway: the influence of nucleo-cytoplasmic shuttling of beta-catenin and its antagonists APC, Axin and GSK3
Schmitz Y, Rateitschak K, Wolkenhauer O
12th International Conference on Systems Biology (ICSB), Heidelberg/Mannheim, Germany, 28 August - 1 September 2011
Venue: Heidelberg/Mannheim, Germany
Mathematical modelling of nucleo-cytoplasmic shuttling of beta-catenin and its antagonist APC
Schmitz Y, Wolkenhauer O, Rateitschak K
11th International Conference on Systems Biology (ICSB), Edinburgh, UK, 10-15 October 2010
Venue: Edinburgh, UK
Elucidating the role of nucleo-cytoplasmic shuttling of beta-catenin antagonists by mathematical modelling
Schmitz Y, Bader BM, Weiss DG, Wolkenhauer O, Rateitschak K
Summer School on Systems Biology for Medical Applications, Tenerife, Spain, 30.09.-02.10.2008
Venue: Tenerife, Spain
Quantitative 3D image analysis to study the beta-catenin translocation during differentiation of human neural progenitor cells
Bader BM, Schmitz Y, Redlich B, Rateitschak K, Wolkenhauer O, Weiss DG
2nd International Congress on Stem Cells and Tissue Formation, Dresden, Germany, July 2008
Venue: Dresden, Germany
Mathematical modeling of neurodegenerative processes in alzheimer's diesease
Rateitschak K, Schmidt V, Carlo AS, Sporbertm A, Lao A, Wolkenhauer O, Willnow T
First status seminar of the Helmholtz alliance on systems biology. Potsdam, Germany, June 2008
Venue: Potsdam, Germany
Compartmental Modelling of the Wnt pathway
Schmitz Y
The Wnt pathway plays a critical role in development and disease. The key player of the pathway is b-cat. In the nucleus, the complex formation of b-cat and TCF initiates target gene expression. Its activity is mainly regulated by retention and degradation by its antagonists APC, Axin and GSK3. Based on experimental findings, I develop and investigate compartmental models in order to analyse of the role of nucleo-cytoplasmic shuttling of these proteins in Wnt signalling. I show that the compartmental separation of b-cat and its antagonists yields an increase of the b-cat/TCF concentration.
Defense: 19 December 2013