SBI – Department of Systems Biology and Bioinformatics
Faculty of Computer Science and Electrical Engineering
University of Rostock
Ulmenstrasse 69 | 18057 Rostock
Germany
+49 381 498-7571
olaf.wolkenhauer@uni-rostock.de
Thesis title: "A Systems Biology Approach to Understand the Influence of SORLA on Amyloidogenic Processing in Alzheimer's"
Research interest
Mathematical modeling of APP processing influenced by SorLA in Alzheimer‘s disease
"I am interested in understanding the interactions among SorLA and the proteins in the APP processing through mathematical modelling."
The processing of Amyloid Precursor Protein (APP), the central pathology of Alzheimer’s disease, undergoes two pathways: amyloidogenic and non-amyloidogenic. The amyloidogenic pathway produces amyloid beta (Aβ) plaque which is a pathological hallmark of Alzheimer’s disease.
The question we focused on is: How does SorLA, the intracellular sorting receptor, influences the processing of APP in Alzheimer’s disease?
It is important to understand how SorLA interacts with the proteins in the processing of APP that eventually reduces the formation of Aβ plaques in Alzheimer’s disease.
We established the mathematical models (without and with compartment details) describing the biochemical networks, including the interactions among SorLA and the proteins in the processing, regulating the decision process between the two pathways. We analyzed the models based on the experimental dose-response data (APP-sAPPα, sAPPβ, Aβ) we produced using the Tet-off mechanism.
The series of dose-response data show a decreasing effect of SorLA to sAPPα and Aβ, and a surprising minimal effect of SorLA to sAPPβ in the APP processing. Our analyses of the mathematical equations suggest that the “compartment model” matches the profile of the experimental dose-response series data for APP-sAPPα and APP-sAPPβ, and the description of the biological knowledge for Aβ in dependence of APP.
Academic background
2008 - 2013 |
Doctorate Degree in Computer Science |
2005 - 2013 |
Doctorate Degree of Science in Mathematics |
2001 - 2004 |
Masters Degree of Science in Mathematics |
1996 - 2000 |
Bachelor Degree of Science in Mathematics |
1996 - 2000 |
Bachelor Degree of Secondary Education in Computer Application |
Selected publications
Multi-compartmental modeling of SORLA's influence on amyloidogenic processing in Alzheimer's disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O (2012)
BMC Systems Biology 6:74
Quantitative modeling of amyloidogenic processing and its influence by SORLA in Alzheimer's disease
Schmidt V, Baum K, Lao A, Rateitschak K, Schmitz Y, Teichmann A, Wiesner B, Petersen CM, Nykjaer A, Wolf J, Wolkenhauer O, Willnow T (2012)
EMBO Journal 31: 187-200
Regulated Trafficking of APP by SORLA in Alzheimers Disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O
Systems Medicine International Conference (SYSMED), Dublin, Ireland, 9 September - 13 September 2012
Venue: Dublin, Ireland
Multi-compartmental modeling of APP processing influenced by SORLA in Alzheimers disease
Lao A, Schmidt V, Schmitz Y, Willnow T, Wolkenhauer O
13th International Conference on Systems Biology (ICSB), Toronto, Canada, 19 August - 23 August 2012
Venue: Toronto, Canada
Mathematical Modeling of APP Processing influenced by SORLA in Alzheimers Disease
Lao A, Schmitz Y, Schmidt V, Rateitschak K, Wolf J, Willnow T, Wolkenhauer O
12th International Conference on Systems Biology (ICSB), Heidelberg/Mannheim, Germany, 28 August - 1 September 2011
Venue: Heidelberg/Mannheim, Germany
Mathematical modelling of APP processing influenced by SORLA in Alzheimer's disease
Schmidt V, Lao A, Rateitschak K, Wolkenhauer O, Willnow T
Honolulu, Hawaii, 10.07-15.07.2010
Venue: Honolulu, Hawaii
Mathematical modelling of APP processing influenced by SORLA in Alzheimer's disease
Lao A, Schmidt V, Rateitschak K, Wolkenhauer O, Willnow T
Mid-term review of the Helmholtz Alliance on Systems Biology, DKFZ, Heidelberg, Germany, 13.01.-14.01.2010
Venue: Heidelberg, Germany
Protein networks controlling amyloidogenic processing
Willnow T, Schmidt V, Lao A, Rateitschak K, Wolkenhauer O
Second status seminar and meeting of the advisory board of the Helmholtz Alliance on Systems Biology, DKFZ, Heidelberg, Germany, 26.10.-27.10.2009
Venue: Heidelberg, Germany
Systems Approaches in Molecular and Cell Biology: Making Sense out of Data, Providing Meaning to Models
Wolkenhauer O, Lao A, Omholt S, Martens H
Independent Component Analysis, Wavelets, Neural Networks, Biosystems and Nanoengineering VII, Orlando, USA, 13.04.2009
DOI: http://dx.doi.org/10.1117/12.822742
Venue: Orlando, USA
Mathematical modelling of APP processing influenced by SORLA in Alzheimer's disease
Lao A, Schmidt V, Rateitschak K, Willnow T, Wolkenhauer O
Spring school 2009 on Systems Biology, Kloster Seeon, Germany, 06.04.-09.04.2009
Venue: Kloster Seeon, Germany
Mathematical modeling of neurodegenerative processes in alzheimer's diesease
Rateitschak K, Schmidt V, Carlo AS, Sporbertm A, Lao A, Wolkenhauer O, Willnow T
First status seminar of the Helmholtz alliance on systems biology. Potsdam, Germany, June 2008
Venue: Potsdam, Germany
A Systems Biology Approach to Understand the Influence of SORLA on Amyloidogenic Processing in Alzheimer's Disease
Lao A
In this dissertation APP processing is modelled and the influence of SORLA in Alzheimer’s disease is evaluated. A model with both monomeric and dimeric APP in a single compartment best fitted the experimental data suggesting that SORLA prevents APP oligomerization and affects β-secretase indirectly. Including compartmental details into the combined model, the multi-compartmental model determines the relative contribution of SORLA to each APP-cleavage step showing that SORLA specifically impairs the processing of APP dimer and alters the dynamical behavior of beta-secretase.
Defense: 29 January 2013