SBI – Department of Systems Biology and Bioinformatics
Faculty of Computer Science and Electrical Engineering
University of Rostock
Ulmenstrasse 69 | 18057 Rostock
Germany
+49 381 498-7571
olaf.wolkenhauer@uni-rostock.de
Research interest
My research interests center around mathematical modeling in time and space to identify the essential rules that govern dynamical systems and their analysis and optimization, especially in connection with interdisciplinary work. In my diploma thesis 'Modeling and simulation of Markov processes to describe chemical reactions', I focused on stochastic processes. During my work at Boehringer Ingelheim, I applied statistical models to describe datasets from clinical studies in consideration of their hierarchical structure.
Dynamics of biochemical networks in pancreatic cancer
"I am interested in the mathematical modeling of experimental data in cancer research at multiple levels to identify key mechanisms that promote cancer progression." Pancreatic cancer (PC) is one of the leading causes of cancer deaths in the Western countries. In this project, we investigate intracellular, intercellular and extracellular processes, which promote the progression of PC, with the goal to treat tumors more efficiently. The investigation of intracellular processes offers a deeper understanding of the chemical kinetics within cells resulting in different cellular phenotypes. Each phenotype has different abilities and, thus, behaves in a different way, for example in cell communication or in interactions with its microenvironment. The investigation of such intercellular and extracellular processes then provides information on the essential mechanisms that promote cancer progression on the tissue level. Importantly, all of these processes do not only occur in time but also in space.
The central question is: How do interactions between pancreatic cancer cells and their microenvironment promote cancer progression?
To investigate interactions between PC cells and their microenvironment, biological hypotheses are translated into biochemical reaction networks. Each network is then translated into a mathematical model, which provides an independent check whether a biological hypothesis is able to reproduce the observed phenomena. The integration of space enables to check whether data patterns are described by the underlying model. The development of novel mathematical approaches is necessary to describe certain phenomena, such as the diffusion of molecules in consideration of excluded volumes leading to efficient simulations, and to analyze simulated patterns. Each mathematical model is always based on simplifications of the biological background, which presents another interesting challenge.
Experimental and theoretical systems biology are combined in this project. Thus, it offers a great chance to be part of interdisciplinary work based on interdisciplinary communication. We intend to understand the inner and outer behavior of different cell types at different levels of organization in PC progression. The investigation and analysis of these complex interactions have the potential to support new strategies in PC treatment.
Academic background
2010 - present
PhD-Student of FORSYS junior research group, Systems Biology and Bioinformatics
University of Rostock, Rostock/Germany
2009 - 2010
Project work at Boehringer Ingelheim Pharma GmbH & Co. KG, Biberach an der Riss
2003 - 2009
Diploma in mathematics (subsidiary subject: biology)
University of Greifswald, Greifswald/Germany
2003
Student research assistant (linear algebra)
University of Greifswald, Greifswald/Germany
2000 - 2003
Study of teaching degree for secondary schools (art, sport and mathematics)
University of Greifswald, Greifswald/Germany
Selected publications
An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers
Kossow C, Rybacki S, Millat T, Rateitschak K, Jaster R, Uhrmacher AM, Wolkenhauer O (2015)
Mathematical and Computer Modelling of Dynamical Systems.
Insights into erlotinib action in pancreatic cancer cells using a combined experimental and mathematical approach
Lange F, Rateitschak K, Kossow C, Wolkenhauer O, Jaster R (2012)
World Journal of Gastroenterology 18: 6226-6234
Mathematical modelling unravels regulatory mechanisms of interferon-?-induced STAT1 serine-phosphorylation and MUC4 expression in pancreatic cancer cells
Kossow C, Jose D, Jaster R, Wolkenhauer O, Rateitschak K (2012)
IET System Biology 6: 73-85
Systems Biology Of JAK-STAT Signalling In Human Malignancies
Vera J, Rateitschak K, Lange F, Kossow C, Wolkenhauer O, Jaster R (2011)
Progress in Biophysics and Molecular Biology 106: 426-434
Continuous states on a grid enable an efficient simulation of diffusion in environments with excluded volumes
Kossow C, Rybacki S, Millat T, Rateitschak K, Uhrmacher AM, Wolkenhauer O
Biotec Forum ''Bioinformatics and Computational Biology'', Dresden, Germany, 06 December - 07 December 2012
Venue: Dresden, Germany
Modelling partners in crime in pancreatic cancer - Application of a cellular automaton model
Christina Kossow
Talk at Department of Mechanical and Process Engineering, Engineering Faculty, Hochschule Wismar-University of Applied Sciences: Technology, Business and Design, Wismar, Germany, 15.03.2012
Venue: Wismar, Germany
Mathematical modelling points out regulatory mechanisms of interferon-gamma induced STAT1 serine phosphorylation and MUC4 expression in pancreatic cancer cells
Kossow C, Jose D, Jaster R, Wolkenhauer O, Rateitschak K
12th International Conference on Systems Biology (ICSB), Heidelberg/Mannheim, Germany, 28 August - 1 September 2011
Venue: Heidelberg/Mannheim, Germany