SBI – Department of Systems Biology and Bioinformatics
Faculty of Computer Science and Electrical Engineering
University of Rostock
Ulmenstrasse 69 | 18057 Rostock
Germany
+49 381 498-7571
olaf.wolkenhauer@uni-rostock.de
AIR: Atlas of Inflammation Resolution
The AIR is to provide an interactive platform connecting scientific and medical communities.
Acute inflammation is a nonlinear spatio-temporal process for the removal of invading pathogens and the repair of damaged tissues. If not resolved, it can lead to chronic inflammatory clinical phenotypes. The AIR provides a comprehensive resource, covering damage-, and pathogen-associated molecular patterns (DAMPs and PAMPs), relevant signaling events, protein-protein interactions and gene regulatory mechanisms underlying acute inflammatory clinical phenotypes. More specifically, the AIR provides:
- An interactive, searchable, scalable, web-based computational representation of acute inflammation and its resolution
- An acute inflammation focused portal to databases such as DrugBank, chEMBL, UniProt, GenBank and PubMed.
- Thousands of manually curated, directed and experimentally validated interactions, allowing for the identification of regulatory motifs, including feedback and feedforward loops.
- A research tool for bioinformatics analyses related to inflammation and inflammation resolutions. Using established standards, like SBML and the Minerva platform , the AIR allows users to map experimental data onto the molecular interaction map and to develop mathematical models for further analysis.
Visit our official Project-Website:
Related publications
Cell-Type-Specific Gene Regulatory Networks of Pro-Inflammatory and Pro-Resolving Lipid Mediator Biosynthesis in the Immune System
Hoch M, Jannik R, Cesnulevicius K, Lescheid D, Schultz M, Wolkenhauer O, Valerio C, Gupta S
Network analyses reveal new insights into the effect of multicomponent Tr14 compared to single-component diclofenac in an acute inflammation model
Hoch M, Cesnulevicius K, Lescheid D, Schultz M, Wolkenhauer O, Gupta S
DOI: https://doi.org/10.1186/s12950-023-00335-0
Pubmed: 36973809
The Atlas of Inflammation-Resolution (AIR)
Serhan CN, Gupta SK, ... , Smita S, Schopohl P, Hoch M, Gjorgevikj D, Khan FM, Brauer D, ... , Wolkenhauer O
A systems appraoch to investigate inflammation resolution by multicomponent medicinal product TR14
Schopohl P, Smita S, Khan F, Gebhardt T, Hoch M, Brauer D, Cesnulevicius D, Schultz M, Wolkenhauer O, Gupta S